glcC
 
Information for glcC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3124537-3126036
-
CDS
glycolate oxidase subunit D
3126287-3127051
+
CDS
glcC
transcriptional activator for glc operon
3127058-3128230
-
CDS
orf; hypothetical protein
 
Reported regulatory sites for glcC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
3126061-3126136
arcA
negative response regulator of genes in aerobic pathways (sensors ArcB and CpxA)
3126197-3126252
arcA
negative response regulator of genes in aerobic pathways (sensors ArcB and CpxA)
 
Species with an ortholog: PA SP EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.659
3126139-3126155
ttagc TACCGGTCAGACCATTT ttttt
-
0
-
5.659
3126256-3126272
agaaa AATTGGTCCTACCTGTG cacga
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.338
3126084-3126102
gcgcg CTGCTTCTGTGAACAGTTA ttaag
arcA
19
-
1.724
3126196-3126213
aatgt TAAATTGATGTAACATAA tcact
arcA
17
-
 
Critical MAP values:
p=0.01
3.55
p=0.05
2.64
p=0.1
2.26
p=0.2
1.86

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