glgB
 
Information for glgB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3566979-3568952
-
CDS
part of glycogen operon; a glycosyl hydrolase; debranching enzyme
3568949-3571135
-
CDS
glgB
1;4-alpha-glucan branching enzyme
3571408-3572511
-
CDS
aspartate-semialdehyde dehydrogenase
 
Reported regulatory sites for glgB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.604
3571336-3571359 R
gcgta ATACAGGAGTAAGCGCAGATGTTT catga
-
0
-
2.604
3571295-3571318 R
ggagt TAAATAGAGCATTGGCTATTCTTT aaggg
-
0
-
1.739
3571207-3571223 R
cagag TGCTGCGCCGTTCAGGT caaaa
-
0
-
0.822
3571370-3571391 R
taaat CTGGGGCGCGATGCCGCCCCTG ttagt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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