glnA
 
Information for glnA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4052870-4053919
-
CDS
histidine protein kinase sensor for GlnG regulator (nitrogen regulator II; NRII)
4054205-4055614
-
CDS
glnA
glutamine synthetase
4055987-4057762
+
CDS
putative GTP-binding factor
 
Reported regulatory sites for glnA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4055819-4055835
ntrC
response regulator for gln (sensor glnL) (nitrogen regulator I NRI)
4055787-4055803
ntrC
response regulator for gln (sensor glnL) (nitrogen regulator I NRI)
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.963
4055819-4055835 R
gtcat TGCACCAACATGGTGCT taatg
ntrC
17
-
5.963
4055787-4055803 R
attga AGCACTATATTGGTGCA acatt
ntrC
17
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.025
4055700-4055722 R
ggcaa TTTAAAAGTTGGCACAGATTTCG cttta
-
0
-
2.546
4055901-4055921 R
acagg ATCACAAACATCCTCCGCAAA caagt
-
0
-
2.546
4055875-4055895 R
caagt ATTGCAGAGTCCCTTTGTGAT cgctt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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