glpD

Information for glpD, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 3559130-3559456 - CDS glpE EG10395 protein of glp regulon 3559646-3561151 + CDS glpD EG10394 sn-glycerol-3-phosphate dehydrogenase (aerobic) 3561357-3561650 - CDS yzgL - orf; hypothetical protein

Reported regulatory sites for glpD: Genome coordinates Source Transcription factor Transcription factor annotation 3559530-3559551 DPInteract crp cyclic AMP receptor protein 3559594-3559613 DPInteract glpR repressor of the glp operon 3559614-3559633 DPInteract glpR repressor of the glp operon 3560009-3560028 PMID: 8955388 glpR repressor of the glp operon 3560050-3560069 PMID: 8955388 glpR repressor of the glp operon

Species with an ortholog: PA SP ST EC VC

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 5.544 3559595-3559612 ctaat ATGTTCGATAACGAACAT ttatg glpR 18 -

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 3.492 3559521-3559538 gcaga TAAACGCCATAATGTTAT acata crp 9 - 3.492 3559543-3559560 tacat ATCACTCTAAAATGTTTT ttcaa crp 9 - 2.168 3559613-3559630 aacat TTATGAGCTTTAACGAAA gtgaa glpR 18 -

Critical MAP values: p=0.01 5.40 p=0.05 4.29 p=0.1 3.77 p=0.2 3.19

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