|
glpT
|
| |
| Information
for glpT, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2347955-2349031
|
-
|
CDS
|
|
|
glycerophosphodiester phosphodiesterase; periplasmic
|
|
2349036-2350394
|
-
|
CDS
|
glpT
|
|
sn-glycerol-3-phosphate permease
|
|
2350667-2352295
|
+
|
CDS
|
|
|
sn-glycerol-3-phosphate dehydrogenase (anaerobic); large subunit
|
|
| |
Reported regulatory
sites for glpT:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
2350421-2350456
|
|
ihf
|
integration host factor (IHF)
|
|
2350245-2350279
|
|
ihf
|
integration host factor (IHF)
|
|
2350146-2350165
|
|
glpR
|
repressor of the glp operon
|
|
2350128-2350147
|
|
glpR
|
repressor of the glp operon
|
|
2350113-2350132
|
|
glpR
|
repressor of the glp operon
|
|
2350552-2350573
|
|
crp
|
cyclic AMP receptor protein
|
|
2350502-2350523
|
|
crp
|
cyclic AMP receptor protein
|
|
2350543-2350562
|
|
glpR
|
repressor of the glp operon
|
|
2350575-2350594
|
|
glpR
|
repressor of the glp operon
|
|
2350595-2350614
|
|
glpR
|
repressor of the glp operon
|
|
2350635-2350654
|
|
glpR
|
repressor of the glp operon
|
|
| |
| Species with
an ortholog: HI PA ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.260
|
2350502-2350523 R
|
taata ATGTGTGCGGCAATTCACATTT aattt
|
crp
|
22
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.652
|
2350624-2350646 R
|
gttcg TTTTTTACCATTTAGCCATAGTA aaaac
|
glpR
|
12
|
-
|
|
|
|
|
0.298
|
2350596-2350613 R
|
atgaa TTGTTTGATTTCGCGCAT attcg
|
glpR
|
18
|
-
|
|
|
|
|
0.298
|
2350556-2350573 R
|
aagtg AAACGTGATTTCATGCGT cattt
|
glpR crp
|
7 18
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|