|
gmhA
|
| |
| Information
for gmhA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
240859-243339
|
-
|
CDS
|
|
|
putative acyl-CoA dehydrogenase (EC 1.3.99.-)
|
|
243543-244121
|
+
|
CDS
|
gmhA
|
|
phosphoheptose isomerase
|
|
244327-245094
|
+
|
CDS
|
|
|
putative amidotransferase
|
|
| |
Reported regulatory
sites for gmhA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.384
|
243492-243509
|
ggcgg TATCCGGTACACTGCATT ttgtc
|
-
|
0
|
-
|
|
|
|
|
2.874
|
243369-243388
|
tgtaa AAACATTTAGCAATATGTTT acaat
|
-
|
0
|
-
|
|
|
|
|
2.874
|
243401-243420
|
aatta CAACAAAGCTCACATTGTTG ctgtt
|
-
|
0
|
-
|
|
|
|
|
2.049
|
243522-243539
|
ttaca TTTATGCTGAAGGATATC ctcat
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|