greB
 
Information for greB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3533503-3534222
-
CDS
response regulator (sensor; EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis
3534414-3534926
+
CDS
greB
transcription elongation factor and transcript cleavage
3535122-3537344
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for greB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.674
3534304-3534327
tctgg TATGAATTTCAGCCTAAATTGTTA caaag
ihf
11
-
1.719
3534369-3534392
attcg GCGAAACATTATTGATTCTGTTGA tatga
crp
9
-
1.262
3534344-3534361
aaaca GCAGCTTAAGTATACAAT ttatt
ihf
18
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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