|
gshA
|
| |
| Information
for gshA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2812239-2812754
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
2812905-2814461
|
-
|
CDS
|
gshA
|
|
gamma-glutamate-cysteine ligase
|
|
2814534-2814962
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for gshA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.552
|
2814462-2814482 R
|
acgat TTTGACAGGCGGGAGGTCAAT ttgat
|
-
|
0
|
-
|
|
|
|
|
2.476
|
2814492-2814508 R
|
tcacc ATTACAGTTATGCTAAT taaaa
|
-
|
0
|
-
|
|
|
|
|
2.289
|
2814475-2814496 R
|
ttatg CTAATTAAAACGATTTTGACAG gcggg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|