hcaT
 
Information for hcaT, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2663434-2664735
+
CDS
orf; hypothetical protein
2664727-2665866
-
CDS
hcaT
MFS (major facilitator superfamily) transporter
2666026-2666916
-
CDS
transcriptional activator of hca cluster
 
Reported regulatory sites for hcaT:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.768
2666001-2666022 R
aatta CGCATTATTTTTGCAACATGCG tcgcg
-
0
-
0.431
2665873-2665892 R
ccaga CTAACGCCTCCTGACGGGAG ggact
-
0
-
0.233
2665923-2665939 R
ggctc GAATATTCTTATTTTTC aactt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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