hfq
 
Information for hfq, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4396830-4397780
+
CDS
delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
4397866-4398174
+
CDS
hfq
host factor I for bacteriophage Q beta replication; a growth-related protein
4398250-4399530
+
CDS
GTP - binding subunit of protease specific for phage lambda cII repressor
 
Reported regulatory sites for hfq:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.923
4397779-4397801
aggct GAATGTGTACAATTGAGACGTAT cgtgc
-
0
-
3.923
4397810-4397832
gcgca ATTTTTTCAGAATCGAAAGGTTC aaagt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.309
4397839-4397854
aagta CAAATAAGCATATAAG gaaaa
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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