hmpA
 
Information for hmpA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2682274-2683527
-
CDS
serine hydroxymethyltransferase
2683855-2685045
+
CDS
hmpA
dihydropteridine reductase; ferrisiderophore reductase activity
2685090-2685428
-
CDS
regulatory protein P-II for glutamine synthetase
 
Reported regulatory sites for hmpA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2683708-2683722
metR
regulator for metE and metH
2683730-2683744
metR
regulator for metE and metH
2683641-2683666
purR
transcriptional repressor for pur regulon glyA glnB prsA speA
 
Species with an ortholog: PA ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.079
2683801-2683822
tattt TTTATAAGATGCATTTGAGATA catca
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.039
2683533-2683549
ccgca TCTCCTGACTCAGCTAA caata
-
0
-
2.803
2683603-2683624
cagta TAACCGAATCATTGTGCGATAA caggt
-
0
-
2.803
2683631-2683652
aggtc TTGACAAAGGAATTTACGCAAA cgatt
purR
12
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

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