hrpA
 
Information for hrpA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1480279-1480884
-
CDS
acyl carrier protein phosphodiesterase
1481142-1484987
+
CDS
hrpA
helicase; ATP-dependent
1485259-1486059
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for hrpA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.712
1480982-1481004
aagcc TATGTTCGAATTTATTGAACAAC gcata
-
0
-
1.712
1481033-1481055
ctcta TATCTATCATTTAAAAGAAAATT aatca
-
0
-
1.503
1480966-1480989
atagc GCAATAAATCGAAGCCTATGTTCG aattt
-
0
-
1.148
1481070-1481091
gacta CTGCCCACTAACGTTATGACAG aacaa
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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