|
hsdR
|
| |
| Information
for hsdR, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4579029-4580618
|
-
|
CDS
|
|
|
host modification; DNA methylase M
|
|
4580819-4584385
|
-
|
CDS
|
hsdR
|
|
host restriction; endonuclease R
|
|
4584519-4585433
|
+
|
CDS
|
|
|
restriction of methylated adenine
|
|
| |
Reported regulatory
sites for hsdR:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: SP ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
0.039
|
4584480-4584503 R
|
tgcag AATCAGGTAGATGTTTTTCGGCTA ctata
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.82
|
|
p=0.05
|
5.66
|
|
p=0.1
|
5.03
|
|
p=0.2
|
4.36
|
|
|