|
htrB
|
| |
| Information
for htrB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1113487-1114713
|
-
|
CDS
|
|
|
putative transport protein
|
|
1114885-1115805
|
-
|
CDS
|
htrB
|
|
heat shock protein
|
|
1116030-1117082
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for htrB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.600
|
1115962-1115979 R
|
atata GCAATTATCGATAATTAA catcc
|
-
|
0
|
-
|
|
|
|
|
1.600
|
1115937-1115954 R
|
tccac ACATTTTACGCTACATTT gcgca
|
-
|
0
|
-
|
|
|
|
|
1.566
|
1115895-1115911 R
|
tattt ACAAGCGCGGCAATTTC gccca
|
-
|
0
|
-
|
|
|
|
|
1.147
|
1115834-1115857 R
|
gcgaa AAAATGCGACAATACATACAATTG cccga
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|