hupA
 
Information for hupA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4197082-4197672
+
CDS
orf; hypothetical protein
4197859-4198131
+
CDS
hupA
DNA-binding protein HU-alpha (HU-2)
4198144-4198839
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for hupA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4197678-4197702
crp
cyclic AMP receptor protein
4197648-4197670
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
4197571-4197598
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
4197516-4197547
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
4197486-4197507
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.273
4197729-4197751
ttcgc CCCCCGTCTGGTCTACATTTGGG gggcg
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.876
4197764-4197787
aaaaa GTGGCTATCGGTGCGTGTATGCAG gagag
-
0
-
3.752
4197686-4197705
aacgt GATTTAACGCCTGATTTGTC gtacc
crp
17
-
3.752
4197822-4197841
ctcga TGCTTAGCAAGCGATAAACA cattg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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