hypF
 
Information for hypF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2831935-2833068
+
CDS
putative oxidoreductase
2833196-2835448
-
CDS
hypF
transcriptional regulatory protein
2835601-2836128
-
CDS
involved in electron transport from formate to hydrogen; Fe-S centers
 
Reported regulatory sites for hypF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: SP ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.459
2835457-2835479 R
gcggg TTACGCAATTCATGATGGCGGGA ataac
-
0
-
1.094
2835508-2835531 R
gcggt ATCGCCGACCTGTGACTGCCGGAT gcgac
-
0
REPt196 (7)
1.094
2835471-2835494 R
gtcgt GTCCGGCAGGGCGGGTTACGCAAT tcatg
-
0
REPt196 (7)
0.187
2835530-2835547 R
gtaga ATACGGAGCGGGCGGTAT cgccg
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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