|
ibpB
|
| |
| Information
for ibpB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3862239-3863924
|
-
|
CDS
|
|
|
putative transport protein
|
|
3864096-3864530
|
-
|
CDS
|
ibpB
|
|
heat shock protein
|
|
3864636-3865049
|
-
|
CDS
|
|
|
heat shock protein
|
|
| |
Reported regulatory
sites for ibpB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
8.551
|
3864580-3864600 R
|
tctcc ATGCTCGCCGTCAGGGAGCAT atgcg
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.845
|
3864533-3864549 R
|
cttac TCGCTTCTTAGAAGGAG aaatg
|
-
|
0
|
-
|
|
|
|
|
4.463
|
3864611-3864627 R
|
cctaa GGCCGCCTGGCGCGGCC tgaca
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|