icdA
 
Information for icdA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1193521-1194144
-
CDS
orf; hypothetical protein
1194346-1195596
+
CDS
icdA
isocitrate dehydrogenase; specific for NADP+
1196090-1196755
-
CDS
orf; hypothetical protein
 
Reported regulatory sites for icdA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
1194216-1194257
arcA
negative response regulator of genes in aerobic pathways (sensors ArcB and CpxA)
1194100-1194115
fruR
transcriptional repressor of fru operon and others
 
Species with an ortholog: PA ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.672
1194165-1194185
tatga ATTGCCGCATTATAGCCTAAT aacgc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.818
1194221-1194244
gggta GTATTGACAAGCCAATTACAAATC attaa
arcA
24
-
4.460
1194236-1194252
gccaa TTACAAATCATTAACAA aaaat
arcA
17
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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