|
idnT
|
| |
| Information
for idnT, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4487709-4488707
|
-
|
CDS
|
|
|
L-idonate transcriptional regulator
|
|
4488774-4490093
|
-
|
CDS
|
idnT
|
|
L-idonate transporter
|
|
4490155-4490919
|
-
|
CDS
|
|
|
5-keto-D-gluconate 5-reductase
|
|
| |
Reported regulatory
sites for idnT:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.962
|
4490123-4490140 R
|
tacgt GCAGCGCGAAAGCGCTGC ttttc
|
-
|
0
|
-
|
|
|
|
|
0.740
|
4490103-4490126 R
|
aagcg CTGCTTTTCTGGCACTAATAAGAG ataaa
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|