kdtA
 
Information for kdtA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3804691-3805725
-
CDS
lipopolysaccharide core biosynthesis
3806167-3807444
+
CDS
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
3807452-3807931
+
CDS
putative enzyme of lipopolysaccharide synthesis
 
Reported regulatory sites for kdtA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.606
3805944-3805963
aaaaa TCAAATAGATAAAAAATAGC atttc
-
0
-
1.606
3806078-3806097
ctgaa GCTATTTAAGTCAAAAACGG gaaaa
-
0
-
1.481
3805743-3805762
gattt TTCGAAATGGCTTTTCCACT agcga
-
0
-
1.481
3805872-3805891
gtgct AGTGTATCATTTCTTTCGCA gcaat
-
0
-
0.972
3805764-3805785
cacta GCGACTCTTTTGTGTGATTGTC tggtt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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