|
kgtP
|
| |
| Information
for kgtP, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2722199-2722471
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
2722468-2723766
|
-
|
CDS
|
kgtP
|
|
alpha-ketoglutarate permease
|
|
2724089-2724208
|
-
|
rRNA
|
|
|
5S rRNA of rrnG operon
|
|
| |
Reported regulatory
sites for kgtP:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST PA EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.194
|
2723849-2723868 R
|
ttaag GTTGCATAATGATATGCAAC aaatg
|
-
|
0
|
-
|
|
-
|
|
|
2.300
|
2724054-2724075 R
|
gcgaa AGGCCATCCTGACGGATGGCCT ttttg
|
-
|
0
|
-
|
|
|
|
|
0.365
|
2723870-2723889 R
|
tcctg CTAACTAAATTCATGGTTAA ggttg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.82
|
|
p=0.05
|
5.66
|
|
p=0.1
|
5.03
|
|
p=0.2
|
4.36
|
|
|