lrhA
 
Information for lrhA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2402649-2403092
-
CDS
NADH dehydrogenase I chain A
2403723-2404661
-
CDS
lrhA
NADH dehydrogenase transcriptional regulator; LysR family
2405581-2406798
+
CDS
putative aminotransferase
 
Reported regulatory sites for lrhA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.954
2404715-2404734 R
acatt ACAAATGGAATTGCTTGTTT gtgtg
-
0
-
2.645
2404697-2404713 R
gtttg TGTGTGCACAGCATTAA ccagc
-
0
-
1.212
2405060-2405081 R
agata ATTCGCAATGACCCTTATAAAT aaaag
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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