lysA
 
Information for lysA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2974621-2975652
+
CDS
repressor of galETK operon
2975659-2976921
-
CDS
lysA
diaminopimelate decarboxylase
2977043-2977978
+
CDS
positive regulator for lys
 
Reported regulatory sites for lysA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.742
2976982-2977002 R
tttgc ATAGACTCGACATAAATCGAT atttt
-
0
-
2.456
2977005-2977028 R
ctcgc AATCCGGTAATCCATATCATTTTT gcata
-
0
-
1.447
2976940-2976957 R
atgtg GCGTAATCATAAAAAAGC actta
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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