lysU
 
Information for lysU, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4350162-4350458
+
CDS
orf; hypothetical protein
4350778-4352295
-
CDS
lysU
lysine tRNA synthetase; inducible; heat shock protein
4352532-4353989
-
CDS
putative peptide transporter
 
Reported regulatory sites for lysU:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4352413-4352437
lrp
regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
4352382-4352406
lrp
regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
 
Species with an ortholog: HI ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.392
4352318-4352337 R
gtctc TTTATCTACGCTAAATTGAA agctg
-
0
-
1.872
4352461-4352476 R
ctaac AAATCGAGATTAATAA gtcat
-
0
-
1.872
4352416-4352431 R
attta TTAGTGATATCAACTT gaggt
lrp
16
-
1.620
4352488-4352511 R
ttggt TATGAATAAATTAACTTTCAGTTT ataac
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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