manX
 
Information for manX, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1898053-1899609
-
CDS
putative transport protein
1900072-1901043
+
CDS
manX
PTS enzyme IIAB; mannose-specific
1901106-1901906
+
CDS
PTS enzyme IIC; mannose-specific
 
Reported regulatory sites for manX:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
1899907-1899927
crp
cyclic AMP receptor protein
1899931-1899956
mlc
putative NAGC-like transcriptional regulator
1899865-1899890
mlc
putative NAGC-like transcriptional regulator
 
Species with an ortholog: ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.173
1899868-1899887
aagga TATTTTACCTTTCGAAATTT ctgct
mlc
20
-
5.173
1899933-1899952
aataa TTTTTTCGATATCTAAAATA aatcg
mlc
20
-
4.195
1899838-1899859
gattt ACCTTCCTTTGCAAACGAATGT gacaa
-
0
-
3.852
1899988-1900007
gccct TATCTGAATCGATTCGATTG tggac
-
0
-
 
Critical MAP values:
p=0.01
7.30
p=0.05
6.05
p=0.1
5.26
p=0.2
4.60

Click here to go back