|
melA
|
| |
| Information
for melA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4338298-4339206
|
-
|
CDS
|
|
|
regulator of melibiose operon
|
|
4339489-4340844
|
+
|
CDS
|
melA
|
|
alpha-galactosidase
|
|
4340959-4342368
|
+
|
CDS
|
|
|
melibiose permease II
|
|
| |
Reported regulatory
sites for melA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
4339374-4339393
|
|
crp
|
cyclic AMP receptor protein
|
|
4339356-4339373
|
|
melR
|
regulator of melibiose operon
|
|
4339394-4339411
|
|
melR
|
regulator of melibiose operon
|
|
4339414-4339431
|
|
melR
|
regulator of melibiose operon
|
|
4339336-4339353
|
|
melR
|
regulator of melibiose operon
|
|
| |
| Species with
an ortholog: ST EC VC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.181
|
4339397-4339416
|
ggatc TGAGTTTATGGGAATGCTCA acctg
|
melR
|
18
|
-
|
|
|
|
|
2.739
|
4339221-4339241
|
tcttt CCTGGAATATCAGAATTATGG cagga
|
melR
|
15
|
-
|
|
|
|
|
2.739
|
4339359-4339379
|
ttatt CCCATAAACTCAGATTTACTG ctgct
|
melR crp
|
15 6
|
-
|
|
|
|
|
2.446
|
4339328-4339349
|
atgag GCCGAAAACTCTGCTTTTCAGG taatt
|
melR
|
14
|
-
|
|
|
|
|
2.446
|
4339419-4339440
|
tcaac CTGGAAGCCGGAGGTTTTCTGC agatt
|
melR
|
13
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.82
|
|
p=0.05
|
5.66
|
|
p=0.1
|
5.03
|
|
p=0.2
|
4.36
|
|
|