menD
 
Information for menD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2374854-2375612
-
CDS
putative enzyme
2375609-2377279
-
CDS
menD
2-oxoglutarate decarboxylase; SHCHC synthase
2377368-2378438
-
CDS
isochorismate hydroxymutase 2; menaquinone biosynthesis
 
Reported regulatory sites for menD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.183
2377326-2377342 R
gattc ATATCAATAATCTATTT ttgta
-
0
-
2.734
2377282-2377298 R
gcaat ATTGATACCGGACAAAC tcatg
-
0
-
1.246
2377352-2377368 R
gaata GTAATGAGTCGCATCAT taccg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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