metB

Information for metB, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 4125658-4125975 - CDS metJ EG10588 repressor of all met genes but metF 4126252-4127412 + CDS metB EG10582 cystathionine gamma-synthase 4127415-4129847 + CDS metL EG10590 aspartokinase II and homoserine dehydrogenase II

Reported regulatory sites for metB: Genome coordinates Source Transcription factor Transcription factor annotation 4126181-4126188 DPInteract metJ repressor of all met genes but metF 4126173-4126180 DPInteract metJ repressor of all met genes but metF 4126165-4126172 DPInteract metJ repressor of all met genes but metF 4126157-4126164 DPInteract metJ repressor of all met genes but metF 4126149-4126156 DPInteract metJ repressor of all met genes but metF

Species with an ortholog: HI PA SP ST EC VC YP

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 6.196 4126157-4126172 cgcaa AGAAGTTTAGATGTCC agatg metJ 16 - 6.196 4126173-4126188 tgtcc AGATGTATTGACGTCC attaa metJ 16 - 4.060 4126138-4126156 gggat TTGCTCAATCTATACGCAA agaag metJ 8 -

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 2.988 4126115-4126132 gcata TAATTTTAACGGCTATTT gggat - 0 -

Critical MAP values: p=0.01 4.80 p=0.05 3.45 p=0.1 2.95 p=0.2 2.42

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