metH
 
Information for metH, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4220383-4221246
-
CDS
repressor of aceBA operon
4221407-4225090
+
CDS
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; repressor of metE and metF
4225310-4226941
+
CDS
putative alpha helix protein
 
Reported regulatory sites for metH:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4221298-4221312
metR
regulator for metE and metH
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.944
4221275-4221295
gttac TGAACTGATCCGATGAGTTAA tgttg
fadR
17
-
1.710
4221294-4221316
gagtt AATGTTGAACAAATCTCATGTTG cgtgg
metR
15
-
1.520
4221363-4221380
ggttt GTTGAATTTTTATTAAAT ctggg
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

Click here to go back