|
mgsA
|
| |
| Information
for mgsA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1023694-1025748
|
+
|
CDS
|
|
|
DNA helicase IV
|
|
1025780-1026247
|
-
|
CDS
|
mgsA
|
|
methylglyoxal synthase
|
|
1026334-1026996
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for mgsA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.262
|
1026263-1026278 R
|
agtgc TTACAGTAATCTGTAG gaaag
|
-
|
0
|
-
|
|
|
|
|
1.411
|
1026282-1026301 R
|
tcggt CTTTATCTTGCAGCGATAAG tgctt
|
-
|
0
|
-
|
|
|
|
|
0.319
|
1026309-1026332 R
|
ctgag ATTTTTGTGCCTGTGCGCAGGCTT tttcg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|