motA
 
Information for motA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1973353-1974279
-
CDS
enables flagellar motor rotation; linking torque machinery to cell wall
1974276-1975163
-
CDS
motA
proton conductor component of motor; no effect on switching
1975290-1975868
-
CDS
regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor
 
Reported regulatory sites for motA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
1975356-1975370
cpxR
transcriptional regulator in 2-component system
 
Species with an ortholog: PA ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
9.176
1975240-1975263 R
ttcca GCAGCGGTAACGACGTACCGCTGC ttttt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.450
1975172-1975195 R
aacat CCTGTCATGGTCAACAGTGGAAGG atgat
-
0
-
1.427
1975264-1975283 R
tgata CGGTGAGGCGCAACATTCCA gcagc
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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