|
nanA
|
| |
| Information
for nanA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3368719-3370239
|
-
|
CDS
|
|
|
sialic acid transporter
|
|
3370318-3371211
|
-
|
CDS
|
nanA
|
|
N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K-12?
|
|
3371333-3372124
|
-
|
CDS
|
|
|
putative FADA-type transcriptional regulator
|
|
| |
Reported regulatory
sites for nanA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.532
|
3371311-3371328 R
|
atgcc ACTTTAGTGAAGCAGATC gcatt
|
-
|
0
|
-
|
|
|
|
|
2.532
|
3371257-3371274 R
|
taatt GATCTGGTATAACAGGTA taaag
|
-
|
0
|
-
|
|
|
|
|
1.014
|
3371293-3371308 R
|
atcgc ATTATAAGCTTTCTGT atggg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.40
|
|
p=0.05
|
4.29
|
|
p=0.1
|
3.77
|
|
p=0.2
|
3.19
|
|
|