|
napF
|
| |
| Information
for napF, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2300770-2301033
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
2301023-2301517
|
-
|
CDS
|
napF
|
|
ferredoxin-type protein: electron transfer
|
|
2301925-2302413
|
+
|
CDS
|
|
|
ecotin; a serine protease inhibitor
|
|
| |
Reported regulatory
sites for napF:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
2301649-2301674
|
|
fnr
|
transcriptional regulation of aerobic anaerobic respiration osmotic balance
|
|
2301631-2301646
|
|
narL
|
pleiotrophic regulation of anaerobic respiration: response regulator for nar frd dms and tor genes
|
|
2301631-2301646
|
|
narP
|
nitrate/nitrite response regulator (sensor NarQ)
|
|
| |
| Species with
an ortholog: SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.262
|
2301717-2301736 R
|
atcgc TATATAAATATATTTATAAC cattt
|
-
|
0
|
-
|
|
|
|
|
3.262
|
2301576-2301595 R
|
gcggc TATAAAAATGGCTTATTAAT tatgc
|
-
|
0
|
-
|
|
|
|
|
3.205
|
2301631-2301646
|
atgca TACCCCGATCGGGGTA aaacc
|
narP narL
|
16 16
|
-
|
|
|
|
|
2.063
|
2301850-2301867 R
|
gttaa CATATTCATCAGATTTAT taatt
|
-
|
0
|
-
|
|
|
|
|
2.063
|
2301818-2301835 R
|
ttatg AATAACTTAAAGAACATT cagac
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|