napF
 
Information for napF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2300770-2301033
-
CDS
orf; hypothetical protein
2301023-2301517
-
CDS
napF
ferredoxin-type protein: electron transfer
2301925-2302413
+
CDS
ecotin; a serine protease inhibitor
 
Reported regulatory sites for napF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
2301649-2301674
fnr
transcriptional regulation of aerobic anaerobic respiration osmotic balance
2301631-2301646
narL
pleiotrophic regulation of anaerobic respiration: response regulator for nar frd dms and tor genes
2301631-2301646
narP
nitrate/nitrite response regulator (sensor NarQ)
 
Species with an ortholog: SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.262
2301717-2301736 R
atcgc TATATAAATATATTTATAAC cattt
-
0
-
3.262
2301576-2301595 R
gcggc TATAAAAATGGCTTATTAAT tatgc
-
0
-
3.205
2301631-2301646
atgca TACCCCGATCGGGGTA aaacc
narP
narL
16
16
-
2.063
2301850-2301867 R
gttaa CATATTCATCAGATTTAT taatt
-
0
-
2.063
2301818-2301835 R
ttatg AATAACTTAAAGAACATT cagac
-
0
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

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