|
ndk
|
| |
| Information
for ndk, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2641149-2642303
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
2642453-2642884
|
-
|
CDS
|
ndk
|
|
nucleoside diphosphate kinase
|
|
2643033-2645345
|
-
|
CDS
|
|
|
putative peptidoglycan enzyme
|
|
| |
Reported regulatory
sites for ndk:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.104
|
2642983-2643002 R
|
aaact CATTTTATTTTAAAAAAATG ttacc
|
-
|
0
|
-
|
|
|
|
|
1.181
|
2642935-2642951 R
|
tgttg CTCATTATAATCCGCGC catct
|
-
|
0
|
-
|
|
|
|
|
0.219
|
2642943-2642966 R
|
aatag TCAACGGCCCTGTTGCTCATTATA atccg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|