nhaR
 
Information for nhaR, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
17489-18655
+
CDS
Na+/H antiporter; pH dependent
18715-19620
+
CDS
nhaR
transcriptional activator of nhaA
19811-20314
-
CDS
IS1 protein InsB
 
Reported regulatory sites for nhaR:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.746
18671-18690
taccg GGGAGCCATAAACGGCTCCC ttttc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.779
18686-18708
aacgg CTCCCTTTTCATTGTTATCAGGG agaga
-
0
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

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