nirB
 
Information for nirB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3490205-3491386
+
CDS
putative transport
3491648-3494191
+
CDS
nirB
nitrite reductase (NAD(P)H) subunit
3494188-3494514
+
CDS
nitrite reductase (NAD(P)H) subunit
 
Reported regulatory sites for nirB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
3491572-3491593
fnr
transcriptional regulation of aerobic anaerobic respiration osmotic balance
3491547-3491562
narL
pleiotrophic regulation of anaerobic respiration: response regulator for nar frd dms and tor genes
3491547-3491562
narP
nitrate/nitrite response regulator (sensor NarQ)
3491475-3491489
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
3491639-3491653
fis
site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
 
Species with an ortholog: PA ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.327
3491544-3491565
cagca ATATACCCATTAAGGAGTATAT aaagg
narP
narL
16
16
-
5.950
3491575-3491590
gtgaa TTTGATTTACATCAAT aagcg
fnr
16
-
5.457
3491561-3491583
aggag TATATAAAGGTGAATTTGATTTA catca
narP
narL
fnr
2
2
12
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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