nlpD
 
Information for nlpD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2864582-2865574
-
CDS
RNA polymerase; sigma S (sigma38) factor; synthesis of many growth phase related proteins
2865637-2866776
-
CDS
nlpD
lipoprotein
2866916-2867542
-
CDS
L-isoaspartate protein carboxylmethyltransferase type II
 
Reported regulatory sites for nlpD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.532
2866837-2866860 R
gtatc GTGAACATCTTTTCCAGTGTTCAG taggg
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.928
2866793-2866809 R
atgtc ACTGGTTATTAACCAAT ttttc
-
0
-
3.433
2866777-2866792 R
ccaat TTTTCCTGGGGGATAA atgag
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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