ompA
 
Information for ompA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1017708-1018160
+
CDS
putative dehydrogenase
1018236-1019276
-
CDS
ompA
outer membrane protein 3a (II*;G;d)
1019633-1020142
-
CDS
suppressor of lon; inhibits cell division and ftsZ ring formation
 
Reported regulatory sites for ompA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
1019443-1019464
crp
cyclic AMP receptor protein
1019347-1019409
stem-loop
RNA stability
1019307-1019335
stem-loop
RNA stability
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.293
1019410-1019426 R
actac GTTGTAGACTTTACATC gccag
-
0
-
3.293
1019326-1019342 R
tgaag GATTTAACCGTGTTATC tcgtt
stem-loop
10
-
3.235
1019280-1019302 R
gcgta TTTTGGATGATAACGAGGCGCAA aaaat
-
0
-
2.661
1019362-1019382 R
cgaag ATATCGGTAGAGTTAATATTG agcag
stem-loop
21
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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