|
osmY
|
| |
| Information
for osmY, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4606983-4608572
|
+
|
CDS
|
|
|
peptide chain release factor RF-3
|
|
4608965-4609570
|
+
|
CDS
|
osmY
|
|
hyperosmotically inducible periplasmic protein
|
|
4609980-4611053
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for osmY:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
4608699-4608720
|
|
crp
|
cyclic AMP receptor protein
|
|
4608612-4608637
|
|
ihf
|
integration host factor (IHF)
|
|
4608633-4608721
|
|
lrp
|
regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.678
|
4608585-4608606
|
ctcca GGGCGCGGTACGCGCTGCGCCC tgtca
|
-
|
0
|
-
|
|
|
|
|
4.285
|
4608907-4608926
|
attca GCAATGCAACCTCGTGTTGC caggc
|
-
|
0
|
-
|
|
|
|
|
3.399
|
4608634-4608650
|
gccgc TTACGGAATGTTCTTAA aacat
|
lrp ihf
|
17 4
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|