oxyR
 
Information for oxyR, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4154429-4155802
+
CDS
argininosuccinate lyase
4156069-4156986
+
CDS
oxyR
activator; hydrogen peroxide-inducible genes
4156969-4158303
-
CDS
putative oxidoreductase
 
Reported regulatory sites for oxyR:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4156010-4156048
oxyR
activator hydrogen peroxide-inducible genes
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.696
4156002-4156025
gcttg ATAGGGATAATCGTTCATTGCTAT tctac
oxyR
16
-
5.696
4156033-4156056
tacct ATCGCCATGAACTATCGTGGCGAT ggagg
oxyR
16
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.634
4155983-4156005
agcaa TTATCAGTCAGAATGCTTGATAG ggata
-
0
-
2.113
4155845-4155865
ccggg CTTTTTTATGGCAAAAAAAAG cggat
-
0
-
2.113
4155903-4155923
gcttt AGTTATTCGAGTTGAGAAACT ctcga
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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