pckA
 
Information for pckA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3528353-3530077
-
CDS
putative transport
3530456-3532078
+
CDS
pckA
phosphoenolpyruvate carboxykinase
3532154-3533506
-
CDS
protein histidine kinase/phosphatase sensor for OmpR; modulates expression of ompF and ompC
 
Reported regulatory sites for pckA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
3530216-3530237
crp
cyclic AMP receptor protein
3530319-3530340
crp
cyclic AMP receptor protein
3530170-3530185
fruR
transcriptional repressor of fru operon and others
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.840
3530145-3530165
tttca GAAAATAATCAAAAAAAGTTA gcgtg
-
0
-
2.840
3530261-3530281
agatt TAACCTTTTGAGAACATTTTC cacac
-
0
-
2.196
3530423-3530444
actat TCAGGCAATACATATTGGCTAA ggagc
-
0
-
2.123
3530217-3530236
tcagg AATGCGATTCCACTCACAAT attcc
crp
20
-
2.123
3530320-3530339
accgt TTCGTGACAGGAATCACGGA gtttt
crp
20
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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