|
pgk
|
| |
| Information
for pgk, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3068185-3069264
|
-
|
CDS
|
|
|
fructose-bisphosphate aldolase; class II
|
|
3069479-3070642
|
-
|
CDS
|
pgk
|
|
phosphoglycerate kinase
|
|
3070692-3071711
|
-
|
CDS
|
|
|
D-erythrose 4-phosphate dehydrogenase
|
|
| |
Reported regulatory
sites for pgk:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
4.391
|
3070644-3070665 R
|
acttt TAGAATCAACGAGAGGATTCAC catgt
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.253
|
3070676-3070692 R
|
aggta AGACGCAAGCAGCGTCT gcaaa
|
-
|
0
|
-
|
|
|
|
|
1.075
|
3070666-3070683 R
|
gcaag CAGCGTCTGCAAAACTTT tagaa
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|