|
pgpB
|
| |
| Information
for pgpB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1336594-1337184
|
-
|
CDS
|
|
|
GTP cyclohydrolase II
|
|
1337354-1338118
|
+
|
CDS
|
pgpB
|
|
non-essential phosphatidylglycerophosphate phosphatase; membrane bound
|
|
1338267-1338575
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for pgpB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI SP ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.308
|
1337229-1337252
|
ttgcc ATAACGAGAAGGGGTTCACCTAAT cacga
|
-
|
0
|
-
|
|
|
|
|
3.233
|
1337283-1337299
|
tggca CAAATCTGTCAATTTTT cctgg
|
-
|
0
|
-
|
|
|
|
|
1.386
|
1337325-1337344
|
ttatg ATTGTGGGACTTATCAAAAA ggaga
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|