pgsA
 
Information for pgsA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1990065-1990141
-
tRNA
Glycine tRNA3
1990292-1990840
-
CDS
pgsA
phosphatidylglycerophosphate synthetase = CDP-1;2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase
1990897-1992663
-
CDS
excinuclease ABC; subunit C; repair of UV damage to DNA
 
Reported regulatory sites for pgsA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.361
1990878-1990899 R
aacat TGATGTCTCTGTAGCAACATAG gggta
-
0
-
2.361
1990853-1990874 R
agggg TAATCTTACTGACAACAGATAG ttacc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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