|
phnA
|
| |
| Information
for phnA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4322876-4323319
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
4323977-4324312
|
-
|
CDS
|
phnA
|
|
orf; hypothetical protein
|
|
4324713-4326941
|
+
|
CDS
|
|
|
putative vimentin
|
|
| |
Reported regulatory
sites for phnA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.896
|
4324367-4324385 R
|
ttgtg TATAATTGCGGCCTTTTTC ggcaa
|
-
|
0
|
-
|
|
|
|
|
2.017
|
4324386-4324407 R
|
acccc CGACAAACTCAGGGATTTTGTG tataa
|
-
|
0
|
-
|
|
|
|
|
1.365
|
4324605-4324628 R
|
tactg CAAGAAATAATTTTATATTTAGTG tgttg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.03
|
|
p=0.05
|
4.63
|
|
p=0.1
|
3.98
|
|
p=0.2
|
3.37
|
|
|