|
phnB
|
| |
| Information
for phnB, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4321955-4322743
|
-
|
CDS
|
|
|
ATP-binding component of phosphonate transport
|
|
4322876-4323319
|
-
|
CDS
|
phnB
|
|
orf; hypothetical protein
|
|
4323977-4324312
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for phnB:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
5.413
|
4323615-4323636 R
|
cgccg CATCCGGCAACGGTGCCGACTG cctga
|
-
|
0
|
REP325e (1) REP325f (8)
|
|
|
|
|
5.413
|
4323515-4323536 R
|
cgccg CATCCGGCAATGGTGCCGACTG cctga
|
-
|
0
|
REP325c (1) REP325d (8)
|
|
|
|
|
3.796
|
4323548-4323564 R
|
accct CCGTAGGCCGGATAAGG cgttt
|
-
|
0
|
REP325d (15)
|
|
|
|
|
3.796
|
4323448-4323464 R
|
accct CCGTAGGCCGGATAAGG cgttt
|
-
|
0
|
REP325b (15)
|
|
|
|
|
2.579
|
4323323-4323339 R
|
gcttc TCTTAACTGAGGTCACC atcat
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.59
|
|
p=0.05
|
6.45
|
|
p=0.1
|
5.76
|
|
p=0.2
|
5.04
|
|
|