|
phnL
|
| |
| Information
for phnL, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4313660-4314796
|
-
|
CDS
|
|
|
phosphonate metabolism
|
|
4314793-4315473
|
-
|
CDS
|
phnL
|
|
ATP-binding component of phosphonate transport
|
|
4315584-4316342
|
-
|
CDS
|
|
|
ATP-binding component of phosphonate transport
|
|
| |
Reported regulatory
sites for phnL:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.008
|
4315561-4315582 R
|
ttgag CCGGTGCCGGATGCGGCGTAAA cgcct
|
-
|
0
|
REP323b (17)
|
|
|
|
|
0.068
|
4315502-4315522 R
|
ggtcg GATAAGACGCGTCAGCGTCGC atccg
|
-
|
0
|
REP323a (21)
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|