polA
 
Information for polA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4043250-4044182
-
CDS
putative endonuclease
4044546-4047332
+
CDS
polA
DNA polymerase I; 3' --> 5' polymerase; 5' --> 3' and 3' --> 5' exonuclease
4047479-4047587
+
misc_RNA
Spot 42 RNA
 
Reported regulatory sites for polA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.749
4044401-4044424
aataa TTTATGCACAAAGTTATCCACATG acgat
-
0
-
2.749
4044512-4044535
catcc TTTACCCATAATCTGATAAACAGG cacgg
-
0
-
2.596
4044436-4044452
tgcga GCGATCCAGAAGATCTA caaaa
-
0
-
1.517
4044299-4044321
ccatt ATCTCAATTATTAGGGATGGATT tattt
-
0
-
1.517
4044481-4044503
tgaaa AACTCATGTTTTCATCCTGTCTG tggca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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