potA
 
Information for potA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1182840-1183667
-
CDS
spermidine/putrescine transport system permease
1183681-1184817
-
CDS
potA
ATP-binding component of spermidine/putrescine transport
1185067-1186293
+
CDS
putative peptidase T
 
Reported regulatory sites for potA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.975
1184889-1184907 R
ttcaa GCGGTTTGCCGTAGAATTA ccgcc
-
0
-
2.975
1184846-1184864 R
ccaag GTGGTTAACCACAAACCCC gcatc
-
0
-
2.633
1185044-1185062 R
tgtag TCACCCTCACTTTTTGTGA caaca
-
0
-
2.633
1184870-1184888 R
aatta CCGCCCTCATTAAGAGTCA ccaag
-
0
-
1.529
1184824-1184845 R
acccc GCATCGGTAAGCCATCCGTTGC gttta
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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