|
pphA
|
| |
| Information
for pphA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
1920061-1920336
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
1920337-1920996
|
-
|
CDS
|
pphA
|
|
protein phosphatase 1 modulates phosphoproteins; signals protein misfolding
|
|
1921389-1921730
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for pphA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.026
|
1921197-1921220 R
|
gcaac TAAGCCTGCATTAATGCCAACTTT tagcg
|
-
|
0
|
-
|
|
|
|
|
1.026
|
1921066-1921089 R
|
acttt ATAGTCAACCATAACACACACTCT actgt
|
-
|
0
|
-
|
|
|
|
|
0.769
|
1921034-1921053 R
|
gagtc CAGCGTTTTTTAACATTCTT gttaa
|
-
|
0
|
-
|
|
|
|
|
0.000
|
1921262-1921281 R
|
attga CCATTTTGCACGCAAACTGG aaaac
|
-
|
0
|
-
|
|
-
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.59
|
|
p=0.05
|
6.45
|
|
p=0.1
|
5.76
|
|
p=0.2
|
5.04
|
|
|